A:
Modeling of pangenome and core-genome sizes as additional genomes of Fusarium oxysporum
pangenome are added.
B:
The distribution and ratios of the pan-genome gene family categories in 31 accessions. The
"core" genes are those present in all accessions, "softcore" genes are present in 30
accessions, "dispensable" genes are present in more than three but less than 30 accessions,
"peripheral" genes are present in 2 to 3 accessions and "private" genes are present in only
one accession.
C:
Presence and absence of pangenome gene families in the 31 Fusarium oxysporum genomes.
2D-F Violin plots showing gene sizes (D), exon numbers (E), and CDS lengths (F) of the genes
in the core, softcore, dispensable, peripheral, and private categories.
A-B:
Ratios of genes annotated by KEGG (A) and GO (B) in core, softcore, dispensable, peripheral,
and private gene categories. The center black line, edges of the box, and the lines above
and below the box and in the plot indicate the median, the upper and lower quartiles, and
the highest and lowest ratio values respectively.
C-D:
KEGG enrichment (C) and GO terms enrichment for biological processes (GO_BP), molecular
functions (GO_MF), and cellular components (GO_CC) of core, softcore, dispensable,
peripheral, and private gene categories. The numbers in the parenthesis in x-axes indicate
the number of genes in the given category.
